New pre-print on optimization of replica exchange — MacCallum Lab
Replica Exchange Molecular Dynamics: A Practical Application Protocol with Solutions to Common Problems and a Peptide Aggregation and Self-Assembly Example. - Abstract - Europe PMC
IJMS | Free Full-Text | A Hamiltonian Replica Exchange Molecular Dynamics (MD) Method for the Study of Folding, Based on the Analysis of the Stabilization Determinants of Proteins
Implementation of replica-exchange umbrella sampling in GAMESS
File:Schematic of a replica exchange molecular dynamics simulation.svg - Wikimedia Commons
Accelerated flexible protein-ligand docking using Hamiltonian replica exchange with a repulsive biasing potential | PLOS ONE
CSIRO PUBLISHING | Australian Journal of Chemistry
Replica exchange molecular dynamics simulations reveal self-association sites in M-crystallin caused by mutations provide insights of cataract | Scientific Reports
Conformational sampling of metastable states: Tq-REM as a novel replica exchange method - Physical Chemistry Chemical Physics (RSC Publishing)
Exchange frequency in replica exchange molecular dynamics: The Journal of Chemical Physics: Vol 128, No 2
Schematic of replica exchange simulations. Multiple copies (replicas)... | Download Scientific Diagram
Replica exchange with solute tempering: A method for sampling biological systems in explicit water | PNAS
Enhanced Conformational Sampling Using Replica Exchange with Collective-Variable Tempering | Journal of Chemical Theory and Computation
Advanced replica-exchange sampling to study the flexibility and plasticity of peptides and proteins. | Semantic Scholar
Massive replica exchange Monte Carlo algorithm: a tool to access high pressure thermodynamics of hard systems - Physical Chemistry Chemical Physics (RSC Publishing)
Temperature Replica Exchange Molecular Dynamics Simulations of Cyclic Peptides - YouTube
Characterization of the three-dimensional free energy manifold for the uracil ribonucleoside from asynchronous replica exchange simulations
All-Atom Molecular Dynamics Simulation Methods for the Aggregation of Protein and Peptides: Replica Exchange/Permutation and Nonequilibrium Simulations | SpringerLink
Tutorials of REMD simulations | GENESIS
Skipping the Replica Exchange Ladder with Normalizing Flows | The Journal of Physical Chemistry Letters
GitHub - invemichele/learned-replica-exchange: Skipping the replica exchange ladder with normalizing flows
TUTORIAL 6 : Free Energy (FE) and replica-exchange methods — DLMONTE 2.0 documentation
Scheme representing two possible behaviors during replica-exchange... | Download Scientific Diagram
LAMMPS Course for Intermediate Users: Replica exchange
Parallel Tempering - an overview | ScienceDirect Topics
On-line Optimization of Hamiltonian Replica Exchange Simulations | bioRxiv
Master defence 2020 - Dmitri Glusco - Replica Exchange For Multiple-Environment Reinforcement Learning
